Table of Contents

• Punnett Squares in Theory
• 1: Introduction
• 2: The Punnett Menu
• 3: Creating combinations chez Punnett
• 4: Insults by the dozen
• 5: Punnett menu revisited
• Punnett Squares in Practice
• 6: Onwards to Genetics
• 7: Recap of genetics vocab
• 8: Can this marriage be saved?
• 9: Vampire Fangs
• 10: Example: Spock and Jax
• 11: Example: Spock and Nurse Chapel
• Bigger Punnett Squares
• 12: And you thought we were done!
• 13: The Dreaded Double Hybrid
• 14: Another Dihybrid Cross
• 15: Is the ratio exact? (Hint: NO!)
• 16: Review

Onwards to genetics

So, let's talk about genetics. Specifically, alleles, genotypes, and phenotypes. The allele I had in mind is a recessive allele called vam37 that causes housemice to develop vampire-like fangs (just try to prove that this doesn't exist).

First, let's define some terms. I'm sure your book has longer definitions (yes, I looked) but this is pretty much what you need to know mathematically speaking.

Allele: An allele is a SINGLE copy of the gene causing a particular effect. In our case, there are two alleles: one causes "wild-type" teeth (aka the teeth that appear most frequently in the wild), the other causes vampire fangs. But alleles don't appear by themselves (except for very brief periods when the cell is reproducing). Normally, alleles come in pairs, like Siamese twins, or yin yang symbols, or ... two sides of one coin.

Genotype: When you put two sides of a coin together, you get money. When you put two alleles together, you get ... a genotype. A coin usually has a heads and a tails, but it could have heads on each side or tails on each side. Likewise, the alleles in the genotype may or may not be the same. The GENOTYPE literally tells you what TYPE of GENES are in the pair. It could be two vampire fang alleles. It could be two wild-type mouse-teeth alleles. It could be one of each. Each of these three possibilities is a genotype.

Phenotype: My analogy is going to break down a little here. Genotype needs to get translated into phenotype (physical reality) somehow. Clearly if the genotype is 2 wild-type teeth alleles, the mouse will have the 'wild-type teeth' phenotype, no need for orthodontia. And, if the genotype has 2 vampire alleles, then the mouse can go around scaring virgins at night and sleeping by day ('vampire teeth' phenotype). But what if the unfortunate mouse has a genotype with one of each allele? Clearly a mouse with half-length vampire teeth would be dysfunctional. And a mouse with vampire teeth only on one side would be a laughingstock. No, either mice are vampires or they're not, which leads us to...

Dominant and Recessive: Since we can't have a half-wild-type, half-vampire mouse, one of the alleles will just have to dominate over the other. The dominating allele is called dominant, while the non-dominating one is called recessive, as in, it recedes into the background. It doesn't go away (this is important!), but it just ... recedes, stands there observing, fidgeting, possibly making nasty but inaudible comments, and generally waiting for its chance for revenge (more about that soon). *For the sake of completeness, I note that some alleles are not dominant or recessive, but additive - their effects add. If this was the case, then one copy of vam37 would give you vampire teeth and the second copy would make the teeth extra long.